CoverView v1.4.3 documentation

Contents:

• 1. Introduction
• 2. Installation
  • 2.1. Dependencies
  • 2.2. Installation on Linux or Mac
  • 2.3. Installation on Windows
• 3. Running CoverView
  • 3.1. With BED file
  • 3.2. Without BED file
  • 3.3. The ensembl_db tool
• 4. Configuration file
• 5. Output files
  • 5.1. Chromosome level summary
  • 5.2. Per-base profiles
  • 5.3. Summary metrics of regions
  • 5.4. Poor quality intervals
• 6. Graphical User Interface (GUI)
  • 6.1. Analysis View
  • 6.2. Genes View
  • 6.3. Regions View
  • 6.4. Profiles View
• 7. CoverView paper